PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G204700.1
Common NamePHAVU_001G204700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 524aa    MW: 57051.8 Da    PI: 8.0396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G204700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0584106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Phvul.001G204700.1  84 FVCEICNKGFQRDQNLQLHRRGH 106
                         89*******************88 PP

2zf-C2H216.23e-05160182123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H++t+
  Phvul.001G204700.1 160 WKCDKCSKRYAVQSDWKAHQKTC 182
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-883106No hitNo description
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PfamPF121718.4E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM0035575125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-6148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-8155181No hitNo description
SMARTSM0035589160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSNISGDEGS FSSGNNGEEV HQESQHQQPQ IQLHDTSPGP SAACNSNAST NQQAKKKRNL  60
PGTPDPSAEV VALSPTTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTSTEV  120
KKRVYVCPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKRYA VQSDWKAHQK  180
TCGTREYKCD CGTIFSRRDS FITHRAFCDA LTEENNRVNQ GLTSGMPPNL QSQIPDLMST  240
MPLNTSPNTA YDPKNPLKSL PQELVPIPFK SMSMGGGMFS TNAGALFGGP KTMPPSSSNL  300
QLGSNTSSSF NYLQDNKSAG LIAASAQMSA TALLQKAAQM GATASNSINS PMMQKGFVTG  360
TTAPDHVSST RPPYSGAMLQ HNNSYEHFCP QPDLSNMAGV SGGGAFINQL FHKGQEISQV  420
FDTNTAGSNI NDVGMFSQMP LGSDHNPGLM KNVEQEVSNC SSLIHGRDVV EGNPMQPSRF  480
GGSDMTTVHD FLGIGGSTSR VMNHFHHHFP HEDSAMEEHM WDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8407700.0HQ840770.1 Phaseolus vulgaris clone BAC B1-157 genotype G19833, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163083.10.0hypothetical protein PHAVU_001G204700g
SwissprotQ9SCQ61e-114IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7CY060.0V7CY06_PHAVU; Uncharacterized protein
STRINGGLYMA19G39640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-115indeterminate(ID)-domain 2